{
    "organism": "Staphylococcys aureus",
    "built_at": "2026-10-10T14:51:26+05:30",
    "review_status": "unreviewed",
    "generator": "CultureScope 1.0.0",
    "disclaimer": "Aggregated from published literature. Unreviewed. Not a substitute for a validated SOP or an accredited reference laboratory.",
    "taxonomy": {
        "taxon": "Staphylococcys aureus",
        "lineage": "",
        "rank": "",
        "taxid": "",
        "taxonomy_url": "",
        "gram_prior": null,
        "accepted": "",
        "gbif_status": "ACCEPTED",
        "gbif_name": "Staphylococcus aureus Rosenbach, 1884"
    },
    "fields": {
        "media": {
            "label": "Media used",
            "multi": true,
            "items": [
                {
                    "key": "brain_heart_infusion_bhi_",
                    "value": "Brain heart infusion (BHI)",
                    "score": 5.07,
                    "sources": [
                        "crossref"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Here, we reconstituted a skin model using keratin as a base (instead of callus) and compared it with brain heart infusion (BHI) medium.",
                            "source": "crossref",
                            "title": "Effects of cosmetic ingredients on growth and virulence factor expression in <i>Staphylococcus aureus</i>: a comparison between culture medium and <i>in vitro</i> skin model medium",
                            "url": "https://doi.org/10.3934/microbiol.2025002",
                            "year": "2024",
                            "id": "doi:10.3934/microbiol.2025002"
                        },
                        {
                            "sentence": "Upon the addition of cosmetic ingredients to BHI or skin model medium, the sensitivity of S. aureus to these cosmetic ingredients differed between the two media.",
                            "source": "crossref",
                            "title": "Effects of cosmetic ingredients on growth and virulence factor expression in <i>Staphylococcus aureus</i>: a comparison between culture medium and <i>in vitro</i> skin model medium",
                            "url": "https://doi.org/10.3934/microbiol.2025002",
                            "year": "2024",
                            "id": "doi:10.3934/microbiol.2025002"
                        },
                        {
                            "sentence": "Notably, after adding the two tested cosmetic ingredients, the expression level of staphylococcal enterotoxin A in S. aureus reduced significantly in skin model medium compared with that in the BHI medium.",
                            "source": "crossref",
                            "title": "Effects of cosmetic ingredients on growth and virulence factor expression in <i>Staphylococcus aureus</i>: a comparison between culture medium and <i>in vitro</i> skin model medium",
                            "url": "https://doi.org/10.3934/microbiol.2025002",
                            "year": "2024",
                            "id": "doi:10.3934/microbiol.2025002"
                        }
                    ],
                    "inferred": false
                },
                {
                    "key": "todd_hewitt_broth",
                    "value": "Todd-Hewitt broth",
                    "score": 0.65,
                    "sources": [
                        "openalex"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Most of the phages can be propagated in fluid media as well as on agar, and for some glucose-peptone-water is a better medium than nutrient or Todd-Hewitt broth.",
                            "source": "openalex",
                            "title": "Bacteriophage typing ofstaphylococcus aureus",
                            "url": "https://doi.org/10.1017/s002217240001963x",
                            "year": "1952",
                            "id": "https://openalex.org/W2125676272"
                        }
                    ],
                    "inferred": false
                }
            ],
            "confidence": "low",
            "conflict": null,
            "review": "unreviewed"
        },
        "temperature": {
            "label": "Optimum temperature for growth",
            "multi": false,
            "items": [],
            "confidence": "none",
            "conflict": null,
            "review": "unreviewed"
        },
        "time": {
            "label": "Time required to grow",
            "multi": false,
            "items": [
                {
                    "key": "hrs_2160_2160",
                    "value": "90 d",
                    "score": 2.33,
                    "sources": [
                        "pmc"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Organoleptic Characteristics and Physico-Chemical Properties The organoleptic characteristics were classified as “normal” with no changes at the initial time (day 0) and after 15, 30, 60 and 90 days.",
                            "source": "pmc",
                            "title": "Effectiveness of Oil-Based Denture Dentifrices-Organoleptic Characteristics, Physicochemical Properties and Antimicrobial Action",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300610/",
                            "year": "2021",
                            "id": "PMC8300610"
                        },
                        {
                            "sentence": "Organoleptic Characteristics and Physico-Chemical Properties After the dentifrices were obtained, the organoleptic characteristics were evaluated in time intervals of 15, 30, 60, and 90 days after their initial assessment [ 20 ].",
                            "source": "pmc",
                            "title": "Effectiveness of Oil-Based Denture Dentifrices-Organoleptic Characteristics, Physicochemical Properties and Antimicrobial Action",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300610/",
                            "year": "2021",
                            "id": "PMC8300610"
                        },
                        {
                            "sentence": "18 After completion of treatment, all patients were followed up every 3 months in the first year, every 6 months in the second year and yearly thereafter.",
                            "source": "pmc",
                            "title": "Surgical management of chronic osteomyelitis: Organisms, recurrence and treatment outcome",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10388580/",
                            "year": "2023",
                            "id": "PMC10388580"
                        }
                    ],
                    "inferred": false
                },
                {
                    "key": "hrs_1008_1008",
                    "value": "6 wk",
                    "score": 1.55,
                    "sources": [
                        "pmc"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Post-operatively, single antibiotic was given intravenously for a period of 1 week, selected from pre-operative culture and modified as per-intraoperative culture, after which single and sensitive oral antibiotic was administered for the next 5 weeks (to make 6 weeks of total duration).",
                            "source": "pmc",
                            "title": "Surgical management of chronic osteomyelitis: Organisms, recurrence and treatment outcome",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10388580/",
                            "year": "2023",
                            "id": "PMC10388580"
                        },
                        {
                            "sentence": "These patients were kept on non-weight bearing for the next 6 weeks, after which gradual weight bearing was started.",
                            "source": "pmc",
                            "title": "Surgical management of chronic osteomyelitis: Organisms, recurrence and treatment outcome",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10388580/",
                            "year": "2023",
                            "id": "PMC10388580"
                        }
                    ],
                    "inferred": false
                },
                {
                    "key": "hrs_168_168",
                    "value": "1 wk",
                    "score": 1.45,
                    "sources": [
                        "pmc"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Post-operatively, single antibiotic was given intravenously for a period of 1 week, selected from pre-operative culture and modified as per-intraoperative culture, after which single and sensitive oral antibiotic was administered for the next 5 weeks (to make 6 weeks of total duration).",
                            "source": "pmc",
                            "title": "Surgical management of chronic osteomyelitis: Organisms, recurrence and treatment outcome",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10388580/",
                            "year": "2023",
                            "id": "PMC10388580"
                        },
                        {
                            "sentence": "The Miswak sample macerated in petroleum ether was macerated for 21 days because after 7 days very negligible amount of extract was obtained.",
                            "source": "pmc",
                            "title": "Detection of antibacterial activities of Miswak , Kalonji and Aloe vera against oral pathogens & anti-proliferative activity against cancer cell line",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5433005/",
                            "year": "2017",
                            "id": "PMC5433005"
                        }
                    ],
                    "inferred": false
                },
                {
                    "key": "hrs_48_72",
                    "value": "2-3 d",
                    "score": 0.78,
                    "sources": [
                        "pmc"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "The purpose of this examination was to decide on the antibiotic therapy in the first 2 - 3 days after surgical debridement (till reports of culture from sequestrum are available).",
                            "source": "pmc",
                            "title": "Surgical management of chronic osteomyelitis: Organisms, recurrence and treatment outcome",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10388580/",
                            "year": "2023",
                            "id": "PMC10388580"
                        }
                    ],
                    "inferred": false
                },
                {
                    "key": "hrs_840_840",
                    "value": "5 wk",
                    "score": 0.78,
                    "sources": [
                        "pmc"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Post-operatively, single antibiotic was given intravenously for a period of 1 week, selected from pre-operative culture and modified as per-intraoperative culture, after which single and sensitive oral antibiotic was administered for the next 5 weeks (to make 6 weeks of total duration).",
                            "source": "pmc",
                            "title": "Surgical management of chronic osteomyelitis: Organisms, recurrence and treatment outcome",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10388580/",
                            "year": "2023",
                            "id": "PMC10388580"
                        }
                    ],
                    "inferred": false
                }
            ],
            "confidence": "low",
            "conflict": "Sources disagree: \"90 d\" (score 2.33) versus \"6 wk\" (score 1.55). Both are shown; a reviewer should decide.",
            "review": "unreviewed"
        },
        "colony": {
            "label": "Colony morphology",
            "multi": false,
            "items": [
                {
                    "key": "c81f88cb86f",
                    "value": "Organoleptic characteristics (appearance, color, odor, taste), physicochemical properties (pH, density, consistency, rheological, abrasiveness, weight loss, and surface roughness) and antimicrobial (Hole-Plate Diffusion-HPD)/anti-biofilm (Colony Forming Units-CFU) action against Staphylococcus aureus , Streptococcus mutans, and Candida albicans were evaluated.",
                    "score": 1.09,
                    "sources": [
                        "europepmc"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Organoleptic characteristics (appearance, color, odor, taste), physicochemical properties (pH, density, consistency, rheological, abrasiveness, weight loss, and surface roughness) and antimicrobial (Hole-Plate Diffusion-HPD)/anti-biofilm (Colony Forming Units-CFU) action against Staphylococcus aureus , Streptococcus mutans, and Candida albicans were evaluated.",
                            "source": "europepmc",
                            "title": "Effectiveness of Oil-Based Denture Dentifrices-Organoleptic Characteristics, Physicochemical Properties and Antimicrobial Action.",
                            "url": "https://doi.org/10.3390/antibiotics10070813",
                            "year": "2021",
                            "id": "MED:34356734 doi:10.3390/antibiotics10070813"
                        }
                    ],
                    "inferred": false
                },
                {
                    "key": "cc113a90301",
                    "value": "Organoleptic characteristics (appearance, color, odor, taste), physicochemical properties (pH, density, consistency, rheological, abrasiveness, weight loss, and surface roughness) and antimicrobial (Hole-Plate Diffusion-HPD)/anti-biofilm (Colony Forming Units-CFU) action against Staphylococcus aureus, Streptococcus mutans, and Candida albicans were evaluated.",
                    "score": 1.09,
                    "sources": [
                        "openalex"
                    ],
                    "n_sources": 1,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Organoleptic characteristics (appearance, color, odor, taste), physicochemical properties (pH, density, consistency, rheological, abrasiveness, weight loss, and surface roughness) and antimicrobial (Hole-Plate Diffusion-HPD)/anti-biofilm (Colony Forming Units-CFU) action against Staphylococcus aureus, Streptococcus mutans, and Candida albicans were evaluated.",
                            "source": "openalex",
                            "title": "Effectiveness of Oil-Based Denture Dentifrices-Organoleptic Characteristics, Physicochemical Properties and Antimicrobial Action",
                            "url": "https://doi.org/10.3390/antibiotics10070813",
                            "year": "2021",
                            "id": "https://openalex.org/W3182876147"
                        }
                    ],
                    "inferred": false
                }
            ],
            "confidence": "low",
            "conflict": null,
            "review": "unreviewed"
        },
        "gram": {
            "label": "Gram character",
            "multi": false,
            "items": [
                {
                    "key": "gram_negative",
                    "value": "Gram-negative",
                    "score": 4.48,
                    "sources": [
                        "pmc",
                        "europepmc",
                        "openalex"
                    ],
                    "n_sources": 3,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Methods Five-day-old (nurses) and fifteen-day-old (foragers) honey bees were treated with CLD, control liposomes, phosphate-buffered saline, injection wound (sham), or left untreated, then exposed at either 32 degC or 22 degC and challenged with the Gram-negative bacterium, Escherichia coli , or the Gram-positive bacterium, Staphylococcus aureus .",
                            "source": "pmc",
                            "title": "Clodronate Liposomes Untangle the Role of Hemocytes in Apis mellifera Response to Temperature Variation and Microbial Infection",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12900532/",
                            "year": "2026",
                            "id": "PMC12900532"
                        },
                        {
                            "sentence": "Methods Five-day-old (nurses) and fifteen-day-old (foragers) honey bees were treated with CLD, control liposomes, phosphate-buffered saline, injection wound (sham), or left untreated, then exposed at either 32 degC or 22 degC and challenged with the Gram-negative bacterium, Escherichia coli, or the Gram-positive bacterium, Staphylococcus aureus.",
                            "source": "europepmc",
                            "title": "Clodronate Liposomes Untangle the Role of Hemocytes in &lt;italic&gt;Apis mellifera&lt;/italic&gt; Response to Temperature Variation and Microbial Infection.",
                            "url": "https://doi.org/10.1159/000550255",
                            "year": "2026",
                            "id": "MED:41505358 doi:10.1159/000550255"
                        },
                        {
                            "sentence": "The major pathological responses to Gram-negative bacterial sepsis are triggered by endotoxin or lipopolysaccharide.",
                            "source": "openalex",
                            "title": "E5531, a synthetic non‐toxic lipid A derivative blocks the immunobiological activities of lipopolysaccharide",
                            "url": "https://doi.org/10.1038/sj.bjp.0702596",
                            "year": "1999",
                            "id": "https://openalex.org/W1965417417"
                        },
                        {
                            "sentence": "These results support our contention that E5531 is a potent antagonist of lipopolysaccharide-induced release of tumour necrosis factor-alpha and other cellular mediators and may be an effective therapeutic agent for human septic shock due to Gram-negative bacteria.",
                            "source": "openalex",
                            "title": "E5531, a synthetic non‐toxic lipid A derivative blocks the immunobiological activities of lipopolysaccharide",
                            "url": "https://doi.org/10.1038/sj.bjp.0702596",
                            "year": "1999",
                            "id": "https://openalex.org/W1965417417"
                        }
                    ],
                    "inferred": false
                },
                {
                    "key": "gram_positive",
                    "value": "Gram-positive",
                    "score": 3.97,
                    "sources": [
                        "pmc",
                        "europepmc",
                        "openalex"
                    ],
                    "n_sources": 3,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "In sample A 93.54% of the reads were classified as Gram-positive bacteria, while in sample B this proportion was only 40.54%.",
                            "source": "pmc",
                            "title": "Antimicrobial resistance genes in raw milk for human consumption",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7198526/",
                            "year": "2020",
                            "id": "PMC7198526"
                        },
                        {
                            "sentence": "Methods Five-day-old (nurses) and fifteen-day-old (foragers) honey bees were treated with CLD, control liposomes, phosphate-buffered saline, injection wound (sham), or left untreated, then exposed at either 32 degC or 22 degC and challenged with the Gram-negative bacterium, Escherichia coli , or the Gram-positive bacterium, Staphylococcus aureus .",
                            "source": "pmc",
                            "title": "Clodronate Liposomes Untangle the Role of Hemocytes in Apis mellifera Response to Temperature Variation and Microbial Infection",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12900532/",
                            "year": "2026",
                            "id": "PMC12900532"
                        },
                        {
                            "sentence": "Methods Five-day-old (nurses) and fifteen-day-old (foragers) honey bees were treated with CLD, control liposomes, phosphate-buffered saline, injection wound (sham), or left untreated, then exposed at either 32 degC or 22 degC and challenged with the Gram-negative bacterium, Escherichia coli, or the Gram-positive bacterium, Staphylococcus aureus.",
                            "source": "europepmc",
                            "title": "Clodronate Liposomes Untangle the Role of Hemocytes in &lt;italic&gt;Apis mellifera&lt;/italic&gt; Response to Temperature Variation and Microbial Infection.",
                            "url": "https://doi.org/10.1159/000550255",
                            "year": "2026",
                            "id": "MED:41505358 doi:10.1159/000550255"
                        },
                        {
                            "sentence": "As measured by release by tumour necrosis factor-alpha, human monocytes or whole blood can be activated by lipopolysaccharide, lipid A, and lipoteichoic acid (from Gram-positive bacteria).",
                            "source": "openalex",
                            "title": "E5531, a synthetic non‐toxic lipid A derivative blocks the immunobiological activities of lipopolysaccharide",
                            "url": "https://doi.org/10.1038/sj.bjp.0702596",
                            "year": "1999",
                            "id": "https://openalex.org/W1965417417"
                        }
                    ],
                    "inferred": false
                }
            ],
            "confidence": "low",
            "conflict": "Sources disagree: \"Gram-negative\" (score 4.48) versus \"Gram-positive\" (score 3.97). Both are shown; a reviewer should decide.",
            "review": "unreviewed"
        },
        "biochem": {
            "label": "Biochemical tests for identification",
            "multi": true,
            "items": [
                {
                    "key": "catalase",
                    "value": "Catalase",
                    "score": 2.43,
                    "sources": [
                        "pmc",
                        "europepmc",
                        "openalex"
                    ],
                    "n_sources": 3,
                    "confidence": "low",
                    "evidence": [
                        {
                            "sentence": "Antioxidant activity was evaluated through Catalase and Superoxide dismutase assay and anti-proliferative activity was evaluated through 3-(4, 5-Dimethylthiazol-2-Yl)-2,5-Diphenyltetrazolium Bromide) assay.",
                            "source": "pmc",
                            "title": "Detection of antibacterial activities of Miswak , Kalonji and Aloe vera against oral pathogens & anti-proliferative activity against cancer cell line",
                            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5433005/",
                            "year": "2017",
                            "id": "PMC5433005"
                        },
                        {
                            "sentence": "Antioxidant activity was evaluated through Catalase and Superoxide dismutase assay and anti-proliferative activity was evaluated through 3-(4, 5-Dimethylthiazol-2-Yl)-2,5-Diphenyltetrazolium Bromide) assay.",
                            "source": "europepmc",
                            "title": "Detection of antibacterial activities of Miswak, Kalonji and Aloe vera against oral pathogens & anti-proliferative activity against cancer cell line.",
                            "url": "https://doi.org/10.1186/s12906-017-1778-0",
                            "year": "2017",
                            "id": "MED:28506259 doi:10.1186/s12906-017-1778-0"
                        },
                        {
                            "sentence": "Antioxidant activity was evaluated through Catalase and Superoxide dismutase assay and anti-proliferative activity was evaluated through 3-(4, 5-Dimethylthiazol-2-Yl)-2,5-Diphenyltetrazolium Bromide) assay.",
                            "source": "openalex",
                            "title": "Detection of antibacterial activities of Miswak, Kalonji and Aloe vera against oral pathogens & anti-proliferative activity against cancer cell line",
                            "url": "https://doi.org/10.1186/s12906-017-1778-0",
                            "year": "2017",
                            "id": "https://openalex.org/W2615462773"
                        }
                    ],
                    "inferred": false
                }
            ],
            "confidence": "low",
            "conflict": null,
            "review": "unreviewed"
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    },
    "references": [
        {
            "title": "Surgical management of chronic osteomyelitis: Organisms, recurrence and treatment outcome",
            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10388580/",
            "year": "2023",
            "id": "PMC10388580",
            "source": "pmc",
            "fields": [
                "time"
            ],
            "n": 8
        },
        {
            "title": "E5531, a synthetic non‐toxic lipid A derivative blocks the immunobiological activities of lipopolysaccharide",
            "url": "https://doi.org/10.1038/sj.bjp.0702596",
            "year": "1999",
            "id": "https://openalex.org/W1965417417",
            "source": "openalex",
            "fields": [
                "gram",
                "time"
            ],
            "n": 4
        },
        {
            "title": "Detection of antibacterial activities of Miswak , Kalonji and Aloe vera against oral pathogens & anti-proliferative activity against cancer cell line",
            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5433005/",
            "year": "2017",
            "id": "PMC5433005",
            "source": "pmc",
            "fields": [
                "biochem",
                "time"
            ],
            "n": 3
        },
        {
            "title": "Effects of cosmetic ingredients on growth and virulence factor expression in <i>Staphylococcus aureus</i>: a comparison between culture medium and <i>in vitro</i> skin model medium",
            "url": "https://doi.org/10.3934/microbiol.2025002",
            "year": "2024",
            "id": "doi:10.3934/microbiol.2025002",
            "source": "crossref",
            "fields": [
                "media"
            ],
            "n": 3
        },
        {
            "title": "Effectiveness of Oil-Based Denture Dentifrices-Organoleptic Characteristics, Physicochemical Properties and Antimicrobial Action",
            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8300610/",
            "year": "2021",
            "id": "PMC8300610",
            "source": "pmc",
            "fields": [
                "time"
            ],
            "n": 2
        },
        {
            "title": "Clodronate Liposomes Untangle the Role of Hemocytes in Apis mellifera Response to Temperature Variation and Microbial Infection",
            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12900532/",
            "year": "2026",
            "id": "PMC12900532",
            "source": "pmc",
            "fields": [
                "gram"
            ],
            "n": 2
        },
        {
            "title": "Clodronate Liposomes Untangle the Role of Hemocytes in &lt;italic&gt;Apis mellifera&lt;/italic&gt; Response to Temperature Variation and Microbial Infection.",
            "url": "https://doi.org/10.1159/000550255",
            "year": "2026",
            "id": "MED:41505358 doi:10.1159/000550255",
            "source": "europepmc",
            "fields": [
                "gram"
            ],
            "n": 2
        },
        {
            "title": "Effectiveness of Oil-Based Denture Dentifrices-Organoleptic Characteristics, Physicochemical Properties and Antimicrobial Action.",
            "url": "https://doi.org/10.3390/antibiotics10070813",
            "year": "2021",
            "id": "MED:34356734 doi:10.3390/antibiotics10070813",
            "source": "europepmc",
            "fields": [
                "colony"
            ],
            "n": 2
        },
        {
            "title": "Detection of antibacterial activities of Miswak, Kalonji and Aloe vera against oral pathogens & anti-proliferative activity against cancer cell line.",
            "url": "https://doi.org/10.1186/s12906-017-1778-0",
            "year": "2017",
            "id": "MED:28506259 doi:10.1186/s12906-017-1778-0",
            "source": "europepmc",
            "fields": [
                "biochem"
            ],
            "n": 2
        },
        {
            "title": "Antimicrobial resistance genes in raw milk for human consumption",
            "url": "https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7198526/",
            "year": "2020",
            "id": "PMC7198526",
            "source": "pmc",
            "fields": [
                "gram"
            ],
            "n": 1
        },
        {
            "title": "Fig. 2. Growth curve of a bacterial culture K2-2 in a liquid VD medium with sodium acetate and without an organic substrate for 2.5 days. OD - optical density culture",
            "url": "https://doi.org/10.17816/ecogen50901-37212",
            "year": "",
            "id": "doi:10.17816/ecogen50901-37212",
            "source": "crossref",
            "fields": [
                "time"
            ],
            "n": 1
        },
        {
            "title": "Bacteriophage typing ofstaphylococcus aureus",
            "url": "https://doi.org/10.1017/s002217240001963x",
            "year": "1952",
            "id": "https://openalex.org/W2125676272",
            "source": "openalex",
            "fields": [
                "media"
            ],
            "n": 1
        }
    ],
    "scan_log": [
        {
            "key": "ncbi_taxonomy",
            "label": "NCBI Taxonomy — lineage and accepted name",
            "status": "empty",
            "note": "No taxonomy record matched that name.",
            "records": 0,
            "evidence": 0,
            "ms": 1224
        },
        {
            "key": "lpsn",
            "label": "LPSN — nomenclatural status",
            "status": "skipped",
            "note": "Skipped — LPSN credentials not configured (free registration).",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "straininfo",
            "label": "StrainInfo — strain cross-references",
            "status": "empty",
            "note": "No response (endpoint may require a different path).",
            "records": 0,
            "evidence": 0,
            "ms": 683
        },
        {
            "key": "gbif",
            "label": "GBIF — name resolution",
            "status": "empty",
            "note": "Matched as Staphylococcus aureus Rosenbach, 1884 (ACCEPTED).",
            "records": 0,
            "evidence": 0,
            "ms": 619
        },
        {
            "key": "wikidata",
            "label": "Wikidata — identifier bridge",
            "status": "empty",
            "note": "No Wikidata item.",
            "records": 0,
            "evidence": 0,
            "ms": 868
        },
        {
            "key": "mediadive",
            "label": "DSMZ MediaDive — curated growth media",
            "status": "empty",
            "note": "No media entries matched this name in MediaDive.",
            "records": 0,
            "evidence": 0,
            "ms": 719
        },
        {
            "key": "bacdive",
            "label": "BacDive — curated strain phenotypes",
            "status": "skipped",
            "note": "Skipped — BacDive credentials not configured. This is the single highest-value source; registration is free.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "pubmed",
            "label": "PubMed — culture and cultivation query",
            "status": "empty",
            "note": "No PubMed hits for the culture query.",
            "records": 0,
            "evidence": 0,
            "ms": 719
        },
        {
            "key": "pubmed_pheno",
            "label": "PubMed — morphology and identification query",
            "status": "empty",
            "note": "No PubMed hits for the pheno query.",
            "records": 0,
            "evidence": 0,
            "ms": 1368
        },
        {
            "key": "pmc",
            "label": "PubMed Central — open-access Methods sections",
            "status": "hit",
            "note": "5 open-access full texts mined.",
            "records": 5,
            "evidence": 16,
            "ms": 8680
        },
        {
            "key": "europepmc",
            "label": "Europe PMC — abstract search",
            "status": "hit",
            "note": "4 records from Europe PMC.",
            "records": 4,
            "evidence": 4,
            "ms": 1044
        },
        {
            "key": "europepmc_ft",
            "label": "Europe PMC — full-text mining",
            "status": "empty",
            "note": "0 full texts mined for Methods detail.",
            "records": 0,
            "evidence": 0,
            "ms": 3282
        },
        {
            "key": "crossref",
            "label": "Crossref — DOI metadata",
            "status": "hit",
            "note": "25 DOI records (abstracts only where deposited).",
            "records": 25,
            "evidence": 4,
            "ms": 858
        },
        {
            "key": "openalex",
            "label": "OpenAlex — open scholarly graph",
            "status": "hit",
            "note": "10 works (inverted abstracts reconstructed locally).",
            "records": 10,
            "evidence": 7,
            "ms": 2408
        },
        {
            "key": "semanticscholar",
            "label": "Semantic Scholar — abstracts",
            "status": "empty",
            "note": "Rate-limited or unavailable (keyless access is throttled).",
            "records": 0,
            "evidence": 0,
            "ms": 1081
        },
        {
            "key": "doaj",
            "label": "DOAJ — open-access journals",
            "status": "empty",
            "note": "0 open-access articles.",
            "records": 0,
            "evidence": 0,
            "ms": 521
        },
        {
            "key": "openaire",
            "label": "OpenAIRE — repository publications",
            "status": "empty",
            "note": "0 repository publications.",
            "records": 0,
            "evidence": 0,
            "ms": 14010
        },
        {
            "key": "scielo",
            "label": "SciELO — regional journals",
            "status": "empty",
            "note": "No parseable SciELO response (their JSON output is unstable; a deep link is still provided).",
            "records": 0,
            "evidence": 0,
            "ms": 580
        },
        {
            "key": "ncbi_books",
            "label": "NCBI Bookshelf — reference texts",
            "status": "hit",
            "note": "8 reference-text chapters listed.",
            "records": 8,
            "evidence": 0,
            "ms": 1302
        },
        {
            "key": "core",
            "label": "CORE — aggregated repositories",
            "status": "skipped",
            "note": "Skipped — no API key configured.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "springer",
            "label": "Springer Nature — publisher metadata",
            "status": "skipped",
            "note": "Skipped — no API key configured.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "elsevier",
            "label": "ScienceDirect — publisher metadata",
            "status": "skipped",
            "note": "Skipped — no API key configured.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "preprints",
            "label": "bioRxiv / medRxiv — preprints",
            "status": "empty",
            "note": "0 preprints (not peer reviewed — weighted down).",
            "records": 0,
            "evidence": 0,
            "ms": 927
        },
        {
            "key": "zenodo",
            "label": "Zenodo — datasets and protocols",
            "status": "empty",
            "note": "0 deposits (datasets, theses, protocols).",
            "records": 0,
            "evidence": 0,
            "ms": 6017
        },
        {
            "key": "wikipedia",
            "label": "Wikipedia — orientation only",
            "status": "empty",
            "note": "No article found.",
            "records": 0,
            "evidence": 0,
            "ms": 738
        },
        {
            "key": "atcc",
            "label": "ATCC — deep link",
            "status": "empty",
            "note": "Deep link prepared — open manually.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "nctc",
            "label": "NCTC / UKHSA — deep link",
            "status": "empty",
            "note": "Deep link prepared — open manually.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "google_scholar",
            "label": "Google Scholar — deep link (not crawled)",
            "status": "empty",
            "note": "Deep link prepared — open manually.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "protocols",
            "label": "protocols.io — deep link",
            "status": "empty",
            "note": "Deep link prepared — open manually.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        },
        {
            "key": "researchgate",
            "label": "ResearchGate — deep link",
            "status": "empty",
            "note": "Deep link prepared — open manually.",
            "records": 0,
            "evidence": 0,
            "ms": 0
        }
    ]
}